Manual

• AddAssayData

• AddAssaySetData

• AddDisp

• AddScoreData

• ApplyAssayKey

• Assay-class

• Assay2AssaySet

• AssaySet-class

• BRCA1R.data

• CheckDots

• CheckStanSetup

• CompileModel

• CreateAssayObject

• CreateAssaySetObject

• CreateConfig

• CreateRosaceObject

• CreateRosetteObject

• CreateScoreObject

• EstimateDisp

• EstimateDispStart

• ExtractVarNames

• FilterData

• GenMutLabel

• GenRosaceInput

• GenVarLabel

• GenerateOutput

• GetScoreWide

• HclustMutant

• ImputeData

• IntegrateData

• MCMCCreateScore

• MCMCDiagnostics

• MCMCLfsr

• MCMCRunStan

• MCMCScoreDf

• NormalizeData

• OutputScore

• PMVCountDist

• PlotDisp

• PlotScoreHist

• ReadConfig

• Rosace-class

• RosaceObjectExtract

• RosaceObjectName

• Rosette-class

• RunRosace

• SLR

• Score-class

• VardataExtract

• WriteConfig

• imputeAssaysCount

• imputeAssaysCountKNN

• names

• oct1

• oct1_rosace

• oct1_rosace_scored

• runRosette

• runSLR

• scoreDensity

• scoreHeatmap

• scoreVlnplot

• varPosIndexMap