GenRosaceInputR Documentation

Generate input for Rosace model from Assay or AssaySet

Description

Generate input for Rosace model from Assay or AssaySet

Usage

GenRosaceInput(object, save.input, ...)

## S3 method for class 'AssayGrowth'
GenRosaceInput(object, save.input, pos.label, ctrl.label, thred = 10, ...)

## S3 method for class 'AssaySetGrowth'
GenRosaceInput(object, save.input, pos.label, ctrl.label, thred = 10, ...)

Arguments

object

Assay or AssaySet

save.input

if given save input to the save.input path

...

Additional arguments to be passed to the input generation method.

pos.label

vector of true position of variants

ctrl.label

vector of whether variant is control

thred

integer, threshold for number of variants per position label (index) Passed to function "varPosIndexMap"

Value

A list of input for Rosace1 model