CreateAssaySetObject

R Documentation

Create an AssaySet object

Description

Create an AssaySet object

Create an AssaySetGrowth object

Usage

CreateAssaySetObject(combined.counts, var.names, reps, key, type, ...)

CreateAssaySetGrowthObject(
  combined.counts,
  var.names,
  reps,
  key,
  raw.counts,
  rounds
)

Arguments

combined.counts	A matrix of counts (variants x time points in all reps)
var.names	A vector of variant names
reps	A vector of replicate identity
key	A character string for the experiment
type	Type of experiment: growth
...	Additional arguments for create AssaySet object
raw.counts	raw.counts A matrix of raw counts (variants x cols in reps)
rounds	A vector of number of rounds

Value

An AssaySet object

An AssaySetGrowth object