runSLR

R Documentation

Do simple linear regression on normalized count (Growth)

Description

For each variant, fit a simple linear regression on all replicates across different time points. The regression coefficient, standard error, p-value and any optional scores are returned as part of a Score object.

Usage

runSLR(object, ...)

## S3 method for class 'AssayGrowth'
runSLR(object, ...)

## S3 method for class 'AssaySetGrowth'
runSLR(object, ...)

## S3 method for class 'Rosace'
runSLR(object, name, type, ...)

Arguments

object	An object: AssayGrowth, AssaySetGrowth, or Rosace
...	Additional arguments to be passed to the regression method.
name	character string of Assay/AssaySet name
type	Assay or AssaySet

Value

A Score object with regression result