FilterData

R Documentation

Filter out variants in raw count data

Description

Normalize the data by either a list of wild-type variants or by the total count at the time point.

Usage

FilterData(object, ...)

## S3 method for class 'AssayGrowth'
FilterData(object, na.rmax = 0.5, ...)

## S3 method for class 'Rosace'
FilterData(object, name, key, ...)

Arguments

object	An object: AssayGrowth (na.rm), or Rosace
...	Additional arguments to be passed to the filtering method.
na.rmax	The maximum ratio of NA values allowed in a variant
name	character string of AssayGrowth name
key	key of AssayGrowth

Details

If normalizing by wild-type variants, the wild-type variant names must be specified using wt.var.names

Value

An object with filtered count