NormalizeData

R Documentation

Normalize count (AssayGrowth)

Description

Normalize (filtered and imputed) count data (in Assay) and get normalized count

Usage

NormalizeData(object, normalization.method, ...)

## S3 method for class 'matrix'
NormalizeData(object, normalization.method, var.names, ...)

## S3 method for class 'AssayGrowth'
NormalizeData(object, normalization.method, ...)

## S3 method for class 'Rosace'
NormalizeData(object, normalization.method, name, key, ...)

Arguments

object	An object: matrix, AssayGrowth, or Rosace
normalization.method	The normalization method to use: "wt" or "total"
...	Additional arguments to be passed to the normalization method.
var.names	a vector of variant names to be normalized
name	character string of AssayGrowth name
key	key of AssayGrowth

Value

An object with normalized count