varPosIndexMap

R Documentation

Map each variant to its position label (index)

Description

Threshold is tricky to choose.

Usage

varPosIndexMap(var.names, pos.label, ctrl.label, thred = 10)

Arguments

var.names	character vector of variant names
pos.label	character or numeric vector of true positions
ctrl.label	vector of whether variant is control
thred	integer, threshold for number of variants per position label (index)

Value

data.frame with columns 'variant', 'pos', 'index'