Package index • lilace

All functions

.correct_negative_control(): compute negative control bias correction (intended for internal use)

.filter_data_low_counts(): filter minimum total counts and zero count rows

.generate_model_input(): format model input (intended for internal use)

.get_phi_summary(): get phi parameter summary (intended for internal use)

.get_score_df(): get variant scores dataframe

.summarize_posteriors(): summarize posterior samples (intended for internal use)

lilace_fit_model(): Run Lilace

lilace_from_counts(): Create Lilace object from counts

lilace_from_enrich(): Create Lilace object from enrich processed counts output

lilace_from_files(): Create Lilace object from separate count files for each bin and replicate

lilace_score_density(): Generate score histograms/density plots by mutation type

lilace_score_heatmap(): Generate score heatmap

lilace_sorting_normalize(): Normalize data to cell sorting proportions