Create Lilace object from counts — lilace_from

Formats required information for Lilace to run into a Lilace object. See intro vignette for example usage.

Usage

lilace_from_counts(
  variant_id,
  mutation_type,
  position,
  replicate,
  counts,
  metadata
)

variant_id: a length V vector of unique variant identifiers such as hgvs nomenclature
mutation_type: a vector of mutation types (e.g. synonymous, missense, etc). The label used to identify negative control label should be included in this.
position: a vector of residue positions
replicate: a vector of replicate ids
counts: a (V x K) matrix of bin counts, where K is the number of bins
metadata: a matrix or dataframe of any additional variant information to be incorporated into the final lilace output (e.g. wildtype residue)

a lilace object, with data stored in $data