dotears: Scalable, consistent DAG estimation using observational and interventional data
Xue A, Rao J, Sankararaman S*, Pimentel H*
iScience,
2025
Rosace-AA: Enhancing Interpretation of Deep Mutational Scanning Data with Amino Acid Substitution and Position-Specific Insights
Rao J, Wang M, Howard MK, Macdonald CB, Fraser JS, Coyote-Maestas W, Pimentel H
Biorxiv,
2025
Rosace: a robust deep mutational scanning analysis framework employing position and mean-variance shrinkage
Rao J, Xin R, Macdonald CB, Howard M, Estevam GO, Yee SW, Wang M, Fraser JS, Coyote-Maestas W, Pimentel H
Genome Biology,
2024
